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I guess I never really thought about this until now. It seems there are 3 kind of softwares I use: softwares installed from package manager (the package manager pops up a notification in the desktop when there's an update), softwares installed from 3rd party sources (they usually show any available updates in the app's UI), and softwares installed from docker (no update notifications at all. I just check for update semi-regularly every months or so).
For Docker i use diun since i dont want auto-update (would break stuff sometimes)
Thank you for the recommendation. I think I'll need this at least for my Lemmy instance. I don't want to miss any emergency security release when Lemmy get hacked again in the future.