this post was submitted on 23 Nov 2023
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I don't know of any supporting evidence, but it's possible some of these Chapters are operating under a polite fiction. These Chapters could be from Traitor Legions, but proved themselves loyal beyond a doubt. The powers that be pretend the Primarchs are unknown to keep these Chapters, instead of purging them.
There is also a chance that a Geneseed pool can mutate enough (possibly even intentionally) to not be clearly tied to a Primarch, without being so mutated as to fail the genetic testing.
Both options are speculation on my part.
Late to the party, but i also suspect that the DNA/genetic material of the primarch's is closely guarded. I'm forgetting the name of the head of the mechanicum but didn't the emperor specifically gift him primarch genetic material so the primaris Marines could be made? That may indicate that the material of more rare and less accessible.
Yea, Belisarius Cawl has stable gene-seeds for all of the Primarchs that he is using to make the Primaris Marines, though he's under orders to only use Loyalist Primarch gene-seeds.
Very few Chapters have a complete stable gene-seed, which leads to a lot of the various quirks. And even the application of the gene-seed isn't consistent which changes things even more. Blood Angels and Space Wolves are supposed to have severe genetic instability for example.